Package index • goatea

All functions
`calculate_geneSetRatio()`	Calculate geneSetRatio per gene per enrichment contrast
`colorify()`	Create and/or modify color/gradient palettes
`colorify_map()`	Colorify colorRamp between colors mapping to breakpoint values
`display_palettes()`	Display R grDevices palettes
`example_enrichment`	An example enrichment
`example_genelist`	An example genelist
`example_genesets`	Example genesets
`example_genes_overview`	An example genes overview
`example_ppi_data`	An example ppi data
`file_extension()`	Get file extension
`filter_enrichment()`	Filter enrichment
`get_base_folder()`	Set base folder
`get_ppigraph()`	Get PPI igraph
`get_string_ppi()`	Get STRING database Protein-Protein Interactions
`get_terms_by_keywords()`	Get term names by searching with (partial) keywords
`get_visNetwork()`	Get visNetwork graph
`goatea_server()`	Server for goatea package
`goatea_ui()`	UI for GOATEA package
`hexcolor2rgba()`	Hex code colors to rgba format
`palette_name_mapping()`	Palette original name mapping
`plot_ComplexHeatmap()`	Plot ComplexHeatmap
`plot_EnhancedVolcano()`	Plot EnhancedVolcano
`plot_genelists_overlap_upsetjs()`	Visualize genelists gene overlap in an interactive UpSet plot
`plot_gene_effectsize_ComplexHeatmap()`	Plot gene2effectsize ComplexHeatmap
`plot_splitdot()`	Plot splitdot plot
`plot_termtree()`	Plot semantic similarity termtree
`process_string_input()`	Process Shiny area input string
`read_validate_genelist()`	Read and validate a table with genes (that should be tested in overrepresentation-analysis) for compatibility with this R package#'
`rename_gene_overview()`	Rename the gene overview
`run_genelists_overlap()`	Create gene overview through overlapping genelists information by overlapping significant genes
`run_geneset_enrichment()`	Perform geneset enrichment testing using any supported method
`scale_values_between()`	Scale values between given min/max
`set_significant_N_genes()`	Set significant and number of genes
`wrap_hovertip()`	Wrap Shiny UI element with a hoverable tooltip contained in html div tags
`wrap_loader()`	Wrap Shiny UI element with a loading spinner contained in html div tags

Reference

All functions