Plot gene2effectsize ComplexHeatmap

Plot gene2effectsize ComplexHeatmap

plot_gene_effectsize_ComplexHeatmap(
  genes,
  genes_overview,
  rows_dendrogram = TRUE,
  cols_dendrogram = TRUE,
  plot_n_genes = 50
)

Arguments

genes

character, genes to visualize

genes_overview

dataframe, containing columns: 'symbol', 'SAMPLE_efsi' and 'SAMPLE_pval'

rows_dendrogram

default: FALSE, TRUE to cluster rows and show dendrogram

cols_dendrogram

default: FALSE, TRUE to cluster columns and show dendrogram

plot_n_genes

integer, default: 50, NULL to plot all genes

Value

ComplexHeatmap object

Examples

plot_gene_effectsize_ComplexHeatmap(
  c('gene_1', 'gene_2', 'gene_3', 'gene_4', 'gene_5'), 
  get(load(system.file("extdata", "example_genes_overview.rda", package = "goatea")))
)