Plot semantic similarity termtree — plot_termtree • goatea

Plot semantic similarity termtree

plot_termtree(enrichment, Nterms = NA, Nwords = 5, Nclusters = 1)

Arguments

enrichment: GOAT enrichment result dataframe
Nterms: integer, default: NA to plat all terms, integer sets amount of terms to plot
Nwords: integer, default: 5, sets N summarized words per cluster
Nclusters: integer, default: 1, sets N clusters of terms

Value

ggtree/gg/ggplot object

Examples

plot_termtree(
  get(load(system.file("extdata", "example_enrichment.rda", package = "goatea"))), 
  Nclusters = 3
)
#> Warning: `aes_()` was deprecated in ggplot2 3.0.0.
#> ℹ Please use tidy evaluation idioms with `aes()`
#> ℹ The deprecated feature was likely used in the enrichplot package.
#>   Please report the issue at
#>   <https://github.com/GuangchuangYu/enrichplot/issues>.